Visualize 2-photon data as a video

How To
1

How can I watch the 2-photon recordings as a video? I ran the colab script but it shows" an average image from the movie recorded during an imaging session." This is not satisfying as I want to watch the entire 5-minute movie for different sessions. What is the easiest way to do that?

2

Hi, Which dataset are you seeking to view the 2-photon videos for? Visual Coding 2P or Visual Behavior 2P?

There is not currently a way to view the movies via the AllenSDK, but we may be able to provide a link to an AWS location with the full movie files, depending on which dataset you are interested in.

3

Hi,

Either one would work! I am working to explore the capabilities of two-photon microscopy. If you could provide the instructions to view the videos, that would be great!

Thank you!

4

Is there anyone who can help me view the two photom microscopy videos? I still have been waiting for a response.

Thank you.

5

There are instructions for accessing the raw movies in this tutorial. Specifically, look for the section called “3. (BONUS!) Accessing calcium movies.”