ecephys visual coding dataset (with Neuropixels) gives the CCF coordinates for each unit, and I have used this to group / cluster neural responses based on their anatomical region.
I’m now gearing up to run a similar analysis on the analogous
ophys dataset. For each session, I see that there is a
'targeted_structure' field in the session metadata (returned when I call
Is it safe to assume that every ROI in this session belongs to the anatomical region specified by this
'targeted_structure' field? Or is there more granular information that I should be using? I’m okay with there being some small amount of error in these anatomical labels, but would like to stick on the safe side if possible. In an ideal world, I’d like to get the CCF coordinates for each ROI.