ABC ATLAS - section ID

How To
1

I’m wondering how to relate the 59 sections shown in the ABC atlas to the CCF framework or other reference atlas; can approximate but would like to be more precise THANKS

2

Hi @susant,

Thanks so much for your question. Each section from the whole brain MERFISH dataset was registered to the Allen CCFv3 using a combination of global and section-wise mappings. You can access the data and more detailed explanation of the CCF mapping here: MERFISH CCF mapped coordinates — Allen Brain Cell Atlas - Data Access (alleninstitute.github.io). Please let us know if you have additional questions or suggestions after reviewing these resources. Thank you for your interest in the ABC Atlas!

Best,
Elysha
Product Manager, ABC Atlas

3

Thanks so much. Will be looking at this soon.