Coordinates to brain structure api


given a set of coordinates relative to the CFF, is there an easy way to know in which brain structure they are? E.g. if you have the coordinates for a point that is in the CA1, is there a way to quickly determine that indeed it is in it?

Thank you,

Hi Federico,

The easiest way to do this is to use our Python SDK. Here is some code that prints out the structure(s) annotated at a given CCF coordinate.

For more information, please see the reference space example notebook, the mouse connectivity example notebook, and the ccf whitepaper.

Thanks for stopping by!

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that worked so well! Thank you very much :slight_smile: