Hello, we were recently approved for access to the Berg patch-seq transcriptomic data and wanted to do some preliminary analyses with the initial raw fastq files. I wanted to ask if there is a resource that would allow us to map the (pairs of) fastq files and bam files to sample IDs in the processed count matrices?
For instance, I am not sure what sample ID corresponds to “BT170919-01_E1-50_ACTCGCTA-ACTGCATA.fastq.tar” (nor am I 100% sure what its strand-complement file is) or “ar_656576285_STAR_Aligned.sortedByCoord.out.bam.tar”. I would guess that the fastq file in my example corresponds to one of the samples starting with “BT170919-01_E1-50_”, but I am not sure which.
I have looked for “ACTCGCTA-ACTGCATA” and “656576285” in the metadata and file manifests downloaded from Multimodal Characterization of Individual Neurons - brain-map.org and was not able to find either in any of the spreadsheets provided. There were not any other supplementary data through our download via NeMo/Aspera.
Thank you very much for any tips/help!