Technical


Topic Replies Views Activity
Gene expression "RAW" read in python
transcriptomics ,  python ,  analysis ,  how-to
1 87 October 14, 2020
Access to AGEA correlation data
atlas-reference-maps ,  anatomy ,  analysis ,  how-to ,  in-situ-hybridization
2 105 October 12, 2020
Soma size in Cell Types SDK
atlas-cell-types ,  celltype ,  allensdk ,  api
4 112 September 29, 2020
Ipfx 1.0.1 Release - Notice for Involved
allensdk ,  bug-report
0 87 September 16, 2020
Mouse brain annotation data sets unconnected voxels
atlas-reference-maps ,  atlas-mouse-brain-adult ,  anatomy ,  analysis ,  how-to ,  annotation
4 187 September 16, 2020
Matching experiment section images with brain segmentation
atlas-reference-maps ,  atlas-mouse-brain-connectivity ,  analysis ,  api ,  how-to
8 172 September 15, 2020
Mouse reference atlas: NRRD file header problem, and question on axes
atlas-reference-maps ,  atlas-mouse-brain-connectivity ,  analysis ,  api
1 127 September 14, 2020
Missing region IDs
reference-coordinates ,  analysis ,  how-to ,  software
7 403 September 1, 2020
Brain Observatory Experiment ID 593506466 Only has ONE Neuron Available
brain-observatory-visual-coding ,  analysis ,  allensdk
1 115 August 30, 2020
Stimulus changes within electrophysiology data
atlas-cell-types ,  electrophysiology ,  experiment-design ,  allensdk
2 120 August 29, 2020
Voxel Extraction in Mouse Brain
atlas-reference-maps ,  reference-coordinates ,  anatomy ,  analysis ,  how-to
1 128 August 27, 2020
Human Motor Cortex Single Cell RNAseq Data - is this raw/unprocessed data?
atlas-cell-types ,  atlas-human-brain-adult ,  transcriptomics ,  analysis
2 133 August 24, 2020
Downloading Gene Grid Data Expression at a higher resolution
atlas-reference-maps ,  allensdk ,  api
2 192 August 24, 2020
Alignment of Neuropixel action potentials prior to averaging
brain-observatory-visual-coding
2 91 August 15, 2020
How to find the the starting and ending time of the spontaneous activity - visual coding data
brain-observatory-visual-coding ,  analysis ,  nwb ,  how-to
2 105 August 12, 2020
Atlas of the Developing Human Brain: Genes_matrix_cvs normaliztion
atlas-human-brain-developing
1 91 August 11, 2020
Reading RNA-seq data into python
atlas-cell-types ,  allensdk ,  rna-seq
3 130 August 11, 2020
Mapping to a coronal P14 mouse brain atlas/space
atlas-reference-maps ,  atlas-mouse-brain-adult ,  api ,  how-to
2 232 August 10, 2020
Interpreting df/f trace data and finding stimulus onset
brain-observatory-visual-coding ,  analysis ,  allensdk ,  api ,  how-to
9 325 August 3, 2020
Image-to-reference for whole section or section dataset?
reference-coordinates ,  api ,  how-to
1 151 August 3, 2020
Downloading transcrip.tome file from mouse cortex+hippocampus dataset
atlas-cell-types ,  atlas-mouse-brain-adult ,  transcriptomics ,  bug-report ,  how-to
1 122 July 24, 2020
How gene-level RPKM is calculated (Brainspan)
atlas-human-brain-developing ,  transcriptomics ,  analysis ,  how-to
1 126 July 24, 2020
Human Reference Atlas Right Hemisphere
atlas-reference-maps ,  atlas-human-brain-adult ,  allensdk ,  api ,  software ,  human
1 146 July 24, 2020
Mouse_connectivity_cache difference between structures in experiment dataframe
atlas-mouse-brain-connectivity ,  experiment-design ,  analysis ,  allensdk ,  software
2 133 July 13, 2020
Creating meshes from volumetric data
atlas-reference-maps ,  reference-coordinates ,  anatomy ,  allensdk ,  how-to ,  annotation
5 437 June 28, 2020
Advanced Notice: End-of-life for Allen Brain Explorer (desktop app)
software
0 253 May 27, 2020
Can't open session .nwb files on Matlab or Python
brain-observatory-visual-coding ,  allensdk ,  software
4 433 June 19, 2020
Questions on Timescale of Cell Types EPHYS data
atlas-cell-types ,  electrophysiology ,  experiment-design ,  analysis ,  allensdk
2 196 June 16, 2020
Human Brain Atlas Mesh Files
atlas-reference-maps ,  atlas-human-brain-adult ,  reference-coordinates ,  anatomy ,  how-to ,  software ,  human
3 329 June 15, 2020
Ephys cell type database and duration of slices being ex-vivo
atlas-cell-types ,  experiment-design ,  tissue-process
1 181 June 15, 2020