Topic Replies Views Activity
Downloading Gene Grid Data Expression at a higher resolution
Technical
atlas-reference-maps ,  allensdk ,  api
2 165 August 24, 2020
Quantification of gene expression by in situ hybridization: finding and using the raw values
analysis ,  api ,  how-to ,  in-situ-hybridization ,  annotation ,  developing
23 1005 August 23, 2020
Allen Institute Modeling Workshop 2020
Science
education ,  models ,  analysis ,  workshop
0 99 August 20, 2020
Education webinar Q&A - August 11, 2020
education
1 101 August 13, 2020
Alignment of Neuropixel action potentials prior to averaging
Technical
brain-observatory-visual-coding
2 67 August 15, 2020
How to find the the starting and ending time of the spontaneous activity - visual coding data
Technical
brain-observatory-visual-coding ,  analysis ,  nwb ,  how-to
2 76 August 12, 2020
Getting Started: Scatterplot (tSNE or UMAP)
Transcriptomics Explorer
0 55 August 12, 2020
Getting Started: Gene Expression Heatmap
Transcriptomics Explorer
0 85 August 12, 2020
Getting Started: Dataset Sampling Strategy
Transcriptomics Explorer
0 51 August 12, 2020
DRG (dorsal root ganglion) sc/sn RNAseq profiling from NHP and humans
Science
atlas-cell-types ,  transcriptomics ,  rna-seq ,  human
2 90 August 12, 2020
How do I access raw RNA-Seq data (e.g., FASTQ, bam)?
Technical
request ,  transcriptomics ,  analysis ,  rna-seq
3 1213 August 11, 2020
Atlas of the Developing Human Brain: Genes_matrix_cvs normaliztion
Technical
atlas-human-brain-developing
1 56 August 11, 2020
Reading RNA-seq data into python
Technical
atlas-cell-types ,  allensdk ,  rna-seq
3 59 August 11, 2020
Mapping to a coronal P14 mouse brain atlas/space
Technical
atlas-reference-maps ,  atlas-mouse-brain-adult ,  api ,  how-to
2 176 August 10, 2020
From electrophysiology to t-types
Transcriptomics Explorer
celltype ,  analysis
2 96 August 7, 2020
Interpreting df/f trace data and finding stimulus onset
Technical
brain-observatory-visual-coding ,  analysis ,  allensdk ,  api ,  how-to
9 242 August 3, 2020
Image-to-reference for whole section or section dataset?
Technical
reference-coordinates ,  api ,  how-to
1 132 August 3, 2020
Mean expression of a gene across experiments
Science
transcriptomics ,  analysis ,  how-to ,  mouse
3 155 July 31, 2020
AHBA genotype info
Science
atlas-human-brain-adult ,  experiment-design ,  analysis ,  how-to
2 52 July 28, 2020
Does Allen brain provide user open source to build transcriptomics explorer?
Transcriptomics Explorer
1 73 July 24, 2020
How to find some gene information in TBI mouse altals?
Science
atlas-human-brain-aging-dementia-tbi ,  analysis ,  how-to
2 93 July 24, 2020
Downloading transcrip.tome file from mouse cortex+hippocampus dataset
Technical
atlas-cell-types ,  atlas-mouse-brain-adult ,  transcriptomics ,  bug-report ,  how-to
1 98 July 24, 2020
How gene-level RPKM is calculated (Brainspan)
Technical
atlas-human-brain-developing ,  transcriptomics ,  analysis ,  how-to
1 82 July 24, 2020
Human Reference Atlas Right Hemisphere
Technical
atlas-reference-maps ,  atlas-human-brain-adult ,  allensdk ,  api ,  software ,  human
1 111 July 24, 2020
Quantified ISH data for autism & schizophrenia studies
Technical
human
0 87 July 17, 2020
Behavior data on NDW
Science
experiment-design
2 53 July 15, 2020
Mouse_connectivity_cache difference between structures in experiment dataframe
Technical
atlas-mouse-brain-connectivity ,  experiment-design ,  analysis ,  allensdk ,  software
2 92 July 13, 2020
How to set median data in transcriptomics explorer in mouse datasets?
Transcriptomics Explorer
atlas-mouse-brain-adult ,  transcriptomics ,  how-to
4 96 July 12, 2020
Allen Gene Expression Datasets
Science
atlas-mouse-brain-adult ,  atlas-human-brain-adult ,  rna-seq ,  human
2 123 July 7, 2020
Open Mouse Brain Atlas data available on AWS
atlas-mouse-brain-adult ,  transcriptomics ,  how-to ,  histology ,  software
0 174 June 27, 2020