Topics tagged software

Topic	Replies	Views	Activity
Mouse_connectivity_cache difference between structures in experiment dataframe Technical atlas-mouse-brain-connectivity , experiment-design , analysis , allensdk , software	2	613	July 13, 2020
Open Mouse Brain Atlas data available on AWS atlas-mouse-brain-adult , transcriptomics , how-to , histology , software	0	1049	June 27, 2020
Human Brain Atlas Mesh Files Technical atlas-reference-maps , atlas-human-brain-adult , reference-coordinates , anatomy , how-to , software , human	3	2800	June 15, 2020
Brain Explorer 2 crashing when visualizing human gene data Technical request , atlas-human-brain-adult , brain-explorer , bug-report , software	6	1964	May 27, 2020
3D viewer to view simulations Science analysis , allensdk , how-to , software	3	1012	May 19, 2020
Can we download a Heat Map or t-SNE visualisation? Transcriptomics Explorer atlas-cell-types , analysis , how-to , software	1	695	May 8, 2020
HELP! Jupyter Example Code Abbreviations - Brain Observatory Technical brain-observatory-visual-coding , api , how-to , software	1	802	April 20, 2020
CSD: session.get_current_source_density() hanging Technical brain-observatory-visual-coding , analysis , allensdk , software	5	1113	April 9, 2020
Join us at the eLife Innovation Sprint 2020 training , workshop , software	0	516	April 6, 2020
Creating 3d reference atlas for a P7 mice Technical atlas-reference-maps , reference-coordinates , how-to , software	2	869	March 20, 2020
Details on the mouse isocortex flatmap: how were the cortical coordinates derived? Technical atlas-mouse-brain-adult , anatomy , analysis , software	2	2318	March 12, 2020
Developing a brain atlas through deep learning Show & Tell atlas-mouse-brain-adult , atlas-human-brain-adult , analysis , software	1	690	February 28, 2020
Multichannels systems spike sorting Technical analysis , how-to , software	1	467	February 21, 2020
A programme to support innovators developing tools for open research education , software	0	609	November 28, 2019
Mouse neurons reconstruction -> CCF alignment Show & Tell atlas-mouse-brain-connectivity , reference-coordinates , python , analysis , allensdk , software	2	1318	October 31, 2019
Loading data from transcrip.tome file in Python with h5py Technical transcriptomics , python , analysis , software	2	1603	October 16, 2019
Got questions about software? Visit AllenSDK on GitHub github , nwb , allensdk , how-to , software	0	702	September 10, 2019
Matlab tool to visualize input output strength of specific brain area Show & Tell rave , reference-coordinates , connectivity , analysis , software	1	952	September 5, 2019
3d connectivity strength visualization Technical atlas-mouse-brain-connectivity , analysis , software	2	1053	September 4, 2019
Is dipde unmaintained? Site Feedback models , api , software	2	967	August 14, 2019
Reproducing Allen CCFv3 (eg downloading mouse brain volumes) Technical request , atlas-reference-maps , atlas-mouse-brain-adult , how-to , software	4	1738	August 8, 2019
AllenSDK 0.16.3 released allensdk , bug-report , software	0	718	May 24, 2019
AllenSDK 0.16.2 released Technical reference-coordinates , image-registration , allensdk , tissuecyte , software	0	728	April 26, 2019
Using the the mouse brain reference atlas for cell quantification: example publication Show & Tell atlas-reference-maps , software , publication	0	719	February 26, 2019
RasterMap released as Python package Show & Tell python , analysis , software	0	1874	September 7, 2018
Can I use your software to analyze my own data? Technical analysis , how-to , software	0	890	August 3, 2018
How do I access 2-photon calcium movies? Technical visual-system , analysis , allensdk , how-to , software	1	1436	June 13, 2018